Enel, defeated but desperate, tried to trigger a 'Self-Destruct' on the Ark. "If I cannot have this heaven, no one will!"
Amine stepped onto the deck of the burning ship. He didn't have his stylus, but he had the 'Ancient Archive' he recovered from the Poneglyph. He placed his hand on the Ark's core. "Access Denied, Enel."
With a surge of violet ink, Amine rewrote the Ark's destination. He didn't destroy it; he 'Uninstalled' Enel's influence from it. The lightning God was cast out into the void, drifting toward the moon, while the Ark remained as a monument to the crew's victory.